IsoLife – Stable Isotope Labelled Plant Products for the Life Sciences

Publications based on IsoLife‘s products or labelling services

Mäkelä A, U Witte, P Archambault. 2017.
Benthic macroinfaunal community structure, resource utilisation and trophic relationships in two Canadian Arctic Archipelago polynyas.
PLoS ONE 12(8): e0183034. https://doi.org/10.1371/journal.pone.0183034.

Müller K, S Marhan, E Kandeler, C Poll. 2017.
Carbon flow from litter through soil microorganisms: From incorporation rates to mean residence times in bacteria and fungi.
Soil Biology & Biochemistry 115: 187-196.

WilhelmRC, E Cardenas, H Leung, K Maas, M Hartmann, A Hahn, S Hallam, WW Mohn. 2017.
Data Descriptor: A metagenomics survey of forest soil microbial communities more than a decade after timber harvesting.
NATURE Scientific Data DOI:10.1038/sdata.2017.92.

Herrmann E, W Young, D Rosendale, R Conrad, CU Riedel, M Egert. 2017.
Determination of resistant starch assimilating bacteria in fecal samples of mice by in vitro RNA-based Stable Isotope Probing.
Frontiers in Microbiology 8: 1331.

Liles MR, Kloepper J. 2017.
Use of pectin or pectin-related saccharides to enhance efficacy of plant growth-promoting rhizobacteria (pgpr) strains for promoting growth and health in plants and animals.
Patent Application US 20170202888 A1.

Mäkelä A, U Witte, P Archambault. 2017.
Ice algae versus phytoplankton: resource utilization by Arctic deep sea macroinfauna revealed through isotope labelling experiments.
Marine Ecology Progress Papers 572: 1–18.

Fortier-McGill B, RD Majumdar, L Lam, R Soong, YL Mobarhan, A Sutrisno, R de Visser, MJ Simpson, H Wheeler, M Campbell, A Gorissen, AJ Simpson. 2017.
Comprehensive multiphase (CMP) NMR monitoring of the structural changes and molecular flux within a growing seed.
Journal of Agriculture and Food Chemistry: doi:10.1021/acs.jafc.7b02421.

Carrier M, M Windt, B Ziegler, J Appelt, B Saake, D Meier, A Bridgwater. 2017.
Quantitative insights into the fast pyrolysis of extracted cellulose, hemicelluloses and lignin.
ChemSusChem: dx.doi.org/10.1002/cssc.201700984.

Bastida F, IF Torres, T Hernández, C García. 2017.
The impacts of organic amendments: Do they confer stability against drought on the soil microbial community?
Soil Biology & Biochemistry 113: 173-183.

Mulat DG, F Mosbæk, AJ Warda, D Polag, M Greule, F Keppler, JL Nielsen, A Feilberg. 2017.
Exogenous addition of H2 for an in situ biogas upgrading through biological reduction of carbon dioxide into methane.
Waste Management: doi.org/10.1016/j.wasman.2017.05.054.

Fernández-del-Río L, A Nag, E Gutiérrez Casado, J Ariza, AM Awad, AI Joseph, O Kwon, E Verdin, R de Cabo, C Schneider, JZ Torres, MI Burón, CF Clarke, JM Villalba. 2017.
Kaempferol increases levels of coenzyme Q in kidney cells and serves as a biosynthetic ring precursor.
Free Radical Biology and Medicine: doi.org/10.1016/j.freeradbiomed.2017.06.006.

Cheng L, N Zhang, M Yuan, J Xiao, Y Qin, Y Deng, Q Tu, K Xue, JD Van Nostrand, L Wu, Z He, X Zhou, MB Leigh, KT Konstantinidis, EAG Schuur, Y Luo, JM Tiedje, J Zhou. 2017.
Warming enhances old organic carbon decomposition through altering functional microbial communities.
NATURE – The ISME Journal doi: 10.1038/ismej.

Wakerley DW, MF Kuehnel, KL Orchard, KH Ly, TE Rosser, E Reisner. 2017.
Solar-driven reforming of lignocellulose to H2 with a CdS/CdOx photocatalyst.
NATURE Energy 2: 17021.

Deroover L, J Verspreet, A Luypaerts, G Vandermeulen, CM Courtin, K Verbeke. 2017.
Wheat bran does not affect postprandial plasma short-chain fatty acids from 13C-inulin fermentation in healthy subjects.
Nutrients 9: 83.

Preusser S, S Marhan, C Poll, E Kandeler. 2017.
Microbial community response to changes in substrate availability and habitat conditions in a reciprocal subsoil transfer experiment.
Soil Biology & Biochemistry 105: 138-152.

Turner S, S Meyer-Stüve, A Schippers, G Guggenberger, F Schaarschmidt, B Wild, A Richter, R Dohrmann, R Mikutta. 2017.
Microbial utilization of mineral-associated nitrogen in soils.
Soil Biology & Biochemistry 104: 185-196.

Orgill SE, JR Condon, CA Kirkby, BA Orchard, MK Conyers, RSB Greene, BW Murphy. 2017.
Soil with high organic carbon concentration continues to sequester carbon with increasing carbon inputs.
Geoderma 285: 151-163.

Öquist MG, B Erhagen, M Haei, T Sparrman, U Ilstedt, J Schleucher, MB Nilsson. 2017.
The effect of temperature and substrate quality on the carbon use efficiency of saprotrophic decomposition.
Plant and Soil 414: 113–125.

Scherbl D, M. Renouf, C. Marmet, L. Poquet, I. Cristiani, S. Dahbane, S. Emady-Azar, J. Sauser, J. Galan, F. Dionisi, E. Richling. 2017.
Breakfast consumption induces retarded release of chlorogenic acid metabolites in humans.
European Food Research and Technology 243: 791-806.

Nakabayashi R, K Saito. 2017.
Ultrahigh resolution metabolomics for S-containing metabolites.
Current Opinion in Biotechnology 43: 8-16.

Guhr A. 2016.
Adaptions of saprotrophic filamentous fungi to drought stress in soils: Hydraulic redistribution through mycelia networks and transcriptional responses.
Thesis.

Zabela V, C Sampath, M Oufir, F Moradi-Afrapoli, V Butterweck, M Hamburger. 2016.
Pharmacokinetics of dietary kaempferol and its metabolite 4-hydroxyphenylacetic acid in rats.
Fitoterapia 115: 189-197.

Guhr A, C Marzini, W Borken, C Poll, E Matzner. 2016.
Effect of water redistribution by two distinct saprotrophic fungi on carbon mineralization and nitrogen translocation in dry soil.
Soil Biology & Biochemistry 103: 380-387.

Moradi-Afrapoli F, M Oufir, FR Walter, MA Deli, M Smiesko, V Zabela, V Butterwecke, M Hamburger. 2016.
Validation of UHPLC–MS/MS methods for the determination of kaempferol and its metabolite 4-hydroxyphenyl acetic acid, and application to in vitro blood-brain barrier and intestinal drug permeability studies.
Journal of Pharmaceutical and Biomedical Analysis 128: 264-274.

Heijboer A, HFM ten Berge, PC de Ruiter, H Bracht Jørgensen, GA Kowalchuk, J Bloem. 2016.
Plant biomass, soil microbial community structure and nitrogen cycling under different organic amendment regimes; a 15N tracer-based approach.
Applied Soil Ecology 107: 251-260.

Wild B, N Gentsch, P Čapek, K Diáková, RJ Eloy Alves, J Bárta, A Gittel, G Hugelius, A Knoltsch, P Kuhry, N Lashchinskiy, R Mikutta4, J Palmtag, C Schleper, J Schnecker, O Shibistova, M Takriti VL Torsvik, T Urich, M Watzka, H Šantrůčková, G Guggenberger, A Richter. 2016.
Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils.
NATURE – Scientific Reports 6, Article number: 25607, doi: 10.1038/srep25607.

Ward ND, TS Bianchi, HO Sawakuchi, W Gagne-Maynard, AC Cunha, DC Brito, V Neu, A de Matos Valerio, R da Silva, AV Krusche, JE Richey, RG Keil. 2016.
The reactivity of plant-derived organic matter and the potential importance of priming effects along the lower Amazon River.
Journal of Geophysical Research 121: 1522-1539.

Kramer S, D Dibbern, J Moll, M Huenninghaus, R Koller, D Krueger, S Marhan, T Urich, T Wubet, M Bonkowski, F Buscot, T Lueders, E Kandeler. 2016.
Resource partitioning between bacteria, fungi and protists in the detritusphere of an agricultural soil.
Frontiers in Microbiology 7: 1524.

Doppler M, B Kluger, C Bueschl, C Schneider, R Krska, S Delcambre, K Hiller, M Lemmens, R Schuhmacher. 2016
Stable isotope-assisted evaluation of different extraction solvents for untargeted metabolomics of plants.
International Journal of Molecular Sciences 17: 1017.

Warren CR. 2016.
Simultaneous efflux and uptake of metabolites by roots of wheat.
Plant and Soil 406: 359–374.

Rime T, M Hartmann, B Stierli, AM Anesio, B Frey. 2016.
Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields.
Soil Biology and Biochemistry 98: 30-41.

Lux G. 2016.
Einfluss organischer Düngung auf Ertrag, symbiotische N2-Fixierung und Nährstoffaufnahme von Saatplatterbse (Lathyrus sativus L.), Ackerbohne (Vicia faba L.) und Rotklee (Trifolium pratense L.) sowie auf Ertrag eines nachfolgenden Winterweizens (Triticum aestivum L.).
Thesis.

Vetrovský T, M Štursová, P Baldrian. 2016.
Fungal communities in soils: Soil organic matter degradation.
Methods in Molecular Biology (Microbial Environmental Genomics (MEG)) 1399: 89-100.

Butts CA, G Paturi, MH Tavendale, D Hedderley, H Stoklosinski, T Herath, D Rosendale, N Roy, JA Monro, J Ansell. 2016.
The fate of 13C-labelled and non-labelled inulin predisposed to large bowel fermentation in rats.
Food and Function 7: 1825-1832.

Verbruggen E, J Jansa, EC Hammer, MC Rillig. 2016.
Do arbuscular mycorrhizal fungi stabilize litter-derived carbon in soil?
Journal of Ecology 104: 261-269.

Leung HTC, KR Maas, RC Wilhelm, WW Mohn. 2016.
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils.
NATURE – The ISME Journal 10: 363-375.

Nakabayashi R, H Tsugawa, M Kitajima, H Takayama, K Saito. 2015.
Boosting sensitivity in liquid chromatography–Fourier transform ion cyclotron resonance–Tandem mass spectrometry for product ion analysis of monoterpene indole alkaloids.
Frontiers in Plant Science doi.org/10.3389/fpls.2015.01127.

Guhr A, W Borken, M Spohn, E Matzner. 2015.
Redistribution of soil water by a saprotrophic fungus enhances carbon mineralization.
PNAS 112: 14647-14651.

Musacchi S, S Serra, M Noferini, F Gagliardi, D Bucci, G. Pagliuca, E Zironi. 2015.
Study of the Relation between Peach Ripening and Phenolic Compounds.
Proc. VIIIth Intl. Peach Symposium (Xiloyannis C et al., eds). ISHS Acta Horticulturae 1084.

Read D, WE Huang, AS Whiteley. 2015.
Single Cell Microbial Ecophysiology with Raman-FISH.
Hydrocarbon and Lipid Microbiology Protocols (McGenity TJ et al., eds), Springer Protocols Handbooks, doi 10.1007/8623_2015_153 .

Oberli M, A Marsset-Baglieri, G Airinei, V Santé-Lhoutellier, N Khodorova, D Rémond, A Foucault-Simonin, J Piedcoq, D Tomé, G Fromentin, R Benamouzig, C Gaudichon. 2015.
High true ileal digestibility but not postprandial utilization of nitrogen from bovine meat protein in humans is moderately decreased by high-temperature, long-duration cooking.
The Journal of Nutrition 145: 2221-2228.

Torres Bocero IF. 2015.
Dynamics of carbon in degraded semiarid soils: effects of organic amendments and associated soil microbial communities.
Thesis.

Eichorst SA, F Strasser, T Woyke, A Schintlmeister, M Wagner, D Woebken. 2015.
Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.
FEMS doi.org/10.1093/femsec/fiv106.

Foston M, HL Trajano, R Samuel, CE Wyman, J He, AJ Ragauskas. 2015.
Recalcitrance and structural analysis by water-only flowthrough pretreatment of 13C enriched corn stover stem.
Bioresource Technology 197: 128-136.

De Jong F, C Beecher, M Akond, J Ericson, MA Babar. 2015.
Metabolic effect of drought stress during the grain filling growth stage in wheat measured by Isotopic Ratio Outlier Analysis(IROA).
ePoster.

Mulat DG, A Feilberg. 2015.
GC/MS method for determining carbon isotope enrichment and concentration of underivatized short-chain fatty acids by direct aqueous solution injection of biogas digester samples.
Talanta 143: 56-63.

Dupree R, TJ Simmons, J Mortimer, D Patel, D Iuga, SP Brown, P Dupree. 2015.
Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional 13C solid-state NMR spectroscopy.
Biochemistry 54: 2335-2345.

German DP, SD Allison. 2015.
Drying and substrate concentrations interact to inhibit decomposition of carbon substrates added to combusted Inceptisols from a boreal forest.
Biology and Fertility of Soils 51: 525-533.

Hünninghaus MC. 2015.
Protists in the soil food web of an arable field: Their density, taxonomic composition and functional role in carbon flux.
Thesis.

Van Ruth SM, R de Visser. 2015.
Provenancing flower bulbs by analytical fingerprinting: Convallaria majalis.
Agriculture 5: 17-29.

Dorado C, CA Mullen, AA Boateng. 2015.
Origin of carbon in aromatic and olefin products derived from HZSM-5 catalyzed co-pyrolysis of cellulose and plastics via isotopic labeling.
Applied Catalysis B: Environmental 162: 338-345.

Whitaker J, N Ostle, NP McNamara, AT Nottingham, RD Bardgett, AW Stott, N Salinas, AJQ Ccahuana, P Meir. 2014.
Microbial carbon mineralization in tropical lowland and montane forest soils of Peru.
Frontiers in Microbiology 5: 720.

Dibbern D. 2014.
Key prokaryotic populations contributing to carbon flow in an agricultural soil food web.
Thesis.

Bücker M, C Jäger, D Pfeifer, B Unger. 2014.
Evidence of Si–O–C bonds in cellulosic materials modified by sol–gel-derived silica.
Wood Science Technology 48: 1033-1047.

Weidel E, M Schantz, E Richling. 2014.
A rapid method for quantifying chlorogenic acid levels in potato samples.
Journal of AOAC International 97: 902-907.

Wild B, J Schnecker, RJE Alves, P Barsukov, J Bárta, P Capek, N Gentsch, A Gittel, G Guggenberger, N Lashchinskiy, R Mikutta, O Rusalimova, H Santrucková, O Shibistova, T Urich, M Wazka, G Zrazhevskaya, A Richter. 2014.
Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil.
Soil Biology and Biochemistry 75: 143–151.

Darjany LE, CR Whitcraft, JG Dillon. 2014.
Lignocellulose-responsive bacteria in a southern California salt marsh identified by stable isotope probing.
Frontiers in Microbiology 5: 263.

Schmidt O, MA Horn, S Kolb, HL Drake. 2014.
Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil.
Environmental Microbiology 17: 720-734.

Kramer S. 2014.
Effects of resource availability and quality on soil microorganisms and their carbon assimilation.
Thesis.

Frost G, ML Sleeth, M Sahuri-Arisoylu, B Lizarbe, S Cerdan, L Brody, J Anastasovska, S Ghourab, M Hankir, S Zhang, D Carling, JR Swann, G Gibson, A Viardot, D Morrison, EL Thomas, JD Bell. 2014.
The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism.
NATURE Communications 5. DOI: 10.1038/ncomms4611.

Leung H. 2014.
Long-term effects of timber harvesting on cellulolytic microbial communities in North American coniferous forest soils.
Thesis.

Whitaker J, N Ostle, AT Nottingham, A Ccahuana, N Salinas, RD Bardgett, P Meir, NP McNamara. 2014.
Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient.
Journal of Ecology 102: 1058-1071.

Tannock GW, B Lawley, K Munro, IM Sims, J Lee, CA Butts, N Roy. 2014.
RNA-stable isotope probing (RNA-SIP) shows carbon utilization from inulin by specific bacterial populations in the large bowel of rats.
Applied and Environmental Microbiology 80: 2240-2247.

Torres IF, F Bastida, T Hernández, P Bombach, HH Richnow, C García. 2014.
The role of lignin and cellulose in the carbon-cycling of degraded soils under semiarid climate and their relation to microbial biomass.
Soil Biology & Biochemistry 75: 152-160.

Wu Y, R Conrad. 2014.
Ammonia oxidation dependent growth of group I.1b thaumarchaeota in acidic red soil microcosms.
FEMS Microbiology Ecology 89: 127-134.

Johnson RL, K Schmidt-Rohr. 2014.
Quantitative solid-state 13C NMR with signal enhancement by multiple cross polarization.
Journal of Magnetic Resonance 239: 44-49.

Warner D, J Dijkstra, WH Hendriks, WF Pellikaan. 2014.
Stable isotope-labelled feed nutrients to assess nutrient-specific feed passage kinetics in ruminants.
Journal of the Science of Food and Agriculture 94: 819-824.

Kirkby CA, AE Richardson, LJ Wade, JB Passioura, GD Batten, C Blanchard, JA Kirkegaard. 2014.
Nutrient availability limits carbon sequestration in arable soils.
Soil Biology and Biochemistry 68: 402-409.

Lam L, R Soong, A Sutrisno, R de Visser, MJ Simpson, H Wheeler, M Campbell, WE Maas, M Fey, A Gorissen, H Hutchins, B Andrew, JO Struppe, S Krishnamurthy, R Kumar, M Monette, H Stronks, A Hume, AJ Simpson. 2014.
Comprehensive multiphase NMR spectroscopy of intact 13C labeled seeds.
Journal of Agricultural and Food Chemistry 62: 407-415.

Chatzinotas A, S Schellenberger, K Glaser, S Kolb. 2013.
Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil.
Applied and Environmental Biology 79: 5777-5781.

Carpenter KJ, PK Weber, ML Davisson, J Pett-Ridge, MI Haverty, PJ Keeling. 2013.
Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: Methods for in situ functional and ecological studies of uncultivable microbes.
Microscopy and Microanalysis 19: 1490-1501.

Bueschl C, B Kluger, M Lemmens, G Adam, G Wiesenberger, V Maschietto, A Marocco, J Strauss, S Bödi, GG Thallinger, R Krska, R Schuhmacher. 2013.
A novel stable isotope labelling assisted workflow for improved untargeted LC–HRMS based metabolomics research.
Metabolomics 10: 754-769.

Warner D, LMM Ferreira, MJH Breuer, J Dijkstra, WF Pellikaan. 2013.
Stable isotope labelled plant wax n-alkanes to determine digesta passage through the gastrointestinal tract of ruminants.
PLOS ONE 8: e75496.

Warner D, J Dijkstra, S Tamminga, WF Pellikaan. 2013.
Passage kinetics of concentrates in dairy cows measured with carbon isotopes.
Animal 7: 1935-1943.

Erhagen B. 2013.
Temperature Sensitivity of Soil Carbon Decomposition – Molecular Controls and Environmental Feedbacks
Thesis.

Warner D, LMM Ferreira, MJH Breuer, J Dijkstra, WF Pellikaan. 2013.
Passage kinetics of stable isotope labeled grass silage fibre and fibre-bound protein through the gastrointestinal tract of dairy cows.
Journal Dairy Science 96: 7904-7917.

Komatsu T, J Kikuchi. 2013.
Comprehensive signal assignment of 13C-labeled lignocellulose using multidimensional solution NMR and 13C chemical shift comparison with solid-state NMR.
Analytical Chemistry 85: 8857-8865.

Luz Cayuela M, P Kuikman, R Bakker, JW van Groenigen. 2013.
Tracking C and N dynamics and stabilization in soil amended with wheat residue and its corresponding bioethanol by-product: a 13C/15N study.
Global Change Biology Bioenergy 2: 201-213.

Warner D, J Dijkstra, WH Hendriks, WF Pellikaan. 2013.
Passage kinetics of 13C-labeled corn components through the gastrointestinal tract of dairy cows.
Journal Dairy Science 96: 5844–5858.

Komatsu T, J Kikuchi. 2013.
Selective signal detection in solid-state NMR using rotor-synchronized dipolar dephasing for the analysis of hemicellulose in lignocellulosic biomass.
The Journal of Physical Chemistry Letters 4: 2279−2283.

Nakabayashi R, Y Sawada, Y Yamada, M Suzuki, MY Hirai, T Sakurai, K Saito. 2013.
Combination of liquid chromatography−Fourier transform ion cyclotron resonance-Mass Spectrometry with 13C ‑labeling for chemical assignment of sulfur-containing metabolites in onion bulbs.
Analytical Chemistry 85: 1310-1315.

Hunter WR, A Jamieson, VAI Huvenne, U Witte. 2013.
Sediment community responses to marine vs. terrigenous organic matter in a submarine canyon.
Biogeosciences 10: 67–80.

Foston M, R Samuel, AJ Ragauskas. 2012.
13C cell wall enrichment and ionic liquid NMR analysis: progress towards a high-throughput detailed chemical analysis of the whole plant cell wall.
Analyst 137: 3904-3909.

Semenov AV, MC Pereira e Silva, A Szturc-Koetsier, H Schmitt, J Falcão Salles, JD van Elsas. 2012.
Impact of incorporated fresh 13C potato tissues on the bacterial and fungal community composition of soil.
Soil Biology & Biochemistry 49: 88-95.

Štursová M, L Žifčáková, MB Leigh, R Burgess, P Baldrian. 2012.
Cellulose utilisation in forest litter and soil: identification of bacterial and fungal decomposers.
FEMS Microbiology Ecology 80: 735-746.

Foston M, R Katahira, E Gjersing, MF Davis, AJ Ragauskas. 2012. (see Applications)
Solid-state selective 13C excitation and spin diffusion NMR to resolve spatial dimensions in plant cell walls.
Journal of Agricultural and Food Chemistry 60: 1419-1427.

Paul BK, IM Lubbers, JW van Groenigen. 2012.
Residue incorporation depth is a controlling factor of earth-worm induced nitrous oxide emissions.
Global Change Biology 18: 1141-1151.

Kiers TE, M Duhamel, Y Beesetty, JA Mensah, O Franken, E Verbruggen, CR Fellbaum, GA Kowalchuk, MM Hart, A Bago, TM Palmer, SA West, P Vandenkoornhuyse, J Jansa, H Bücking. 2011. (see Applications)
Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis.
SCIENCE 333: 880-882.

Gorissen A, NU Kraut, R de Visser, M de Vries, H Roelofsen, RJ Vonk. 2011. (see Applications)
No de novo sulforaphane biosynthesis in broccoli seedlings.
Food Chemistry 127: 192-196. Ask a reprint

German, DP, SS Chacon, SD Allison. 2011.
Substrate concentration and enzyme allocation can affect rates of microbial decomposition.
Ecology 92: 1471-1480.

Hagl S, H Deusser, B Soyalan, C Janzowski, F Will, H Dietrich, F Albert, S Rohner, E Richling. 2011.
Colonic availability of polyphenols and D-(-)-quinic acid after apple smoothie consumption.
Molecular Nutrition & Food Research 55: 368-377.

Taylor DL, IC Herriott, KE Stone, JW McFarland, MG Booth, MB Leigh. 2010.
Structure and resilience of fungal communities in Alaskan boreal forest soils.
Canadian Journal of Forest Research 40: 1288–1301.

Binsl TW, AA de Graaf, K Venema, J Heringa, A Maathuis, P de Waard, JHGM van Beek. 2010.
Measuring non-steady-state metabolic fluxes in starch-converting faecal microbiota in vitro.
Beneficial Microbes 1: 391-405.

Venema K, AA de Graaf, AJH Maathuis, P Kovatcheva-Datchary, H Smidt. 2010.
Fermentation in the large intestine unravelled using 13C-labelled substrates: implications for obesity and gut health.
In: Van der Kamp JW, Jones J, McCleary B, Topping D, eds. Dietary fibre: new frontiers for food and health: 539-554. Wageningen Acad. Publishers.

Nocentini C, B Guenet, E di Mattia, G Certini, G Bardoux, C Rumpel. 2010.
Charcoal mineralisation potential of microbial inocula from burned and unburned forest soil with and without substrate addition.
Soil Biology and Biochemistry 42: 1472-1478

May M, J Kuo, M Gray, I Knyazhansky, CT Tan. 2010.
Temperature zonal combustion reactor for the 15-nitrogen and 13-carbon isotopic determination of enriched biosynthetic materials.
Industrial and Engineering Chemical Research 49: 4036-4043.

Schellenberger S, S Kolb, HL Drake. 2010.
Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen. (see Applications)
Environmental Microbiology 12: 845-861.

Erk T, H Bergmann, E Richling. 2009.
A novel method for the quantification of quinic acid in food using stable isotope dilution analysis. (see Applications)
Journal of AOAC International 92: 730-733.

Kovatcheva-Datchary P, M Egbert, A Maathuis, M Rajilic-Stojanovic, AA de Graaf, H Smidt, WM de Vos, K Venema. 2009 (Award winning publication).
Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing. (see Applications)
Environmental Microbiology 11: 914-926.

Bastias BA, IA Anderson, J Ignacio-Castro, PI Parkin, JI Prosser, JWG Cairney. 2009.
Influence of repeated prescribed burning on incorporation of 13C from cellulose by forest soil fungi as determined by RNA stable isotope probing. (see Applications)
Soil Biology & Biochemistry 41: 467-472.

Waldrop MP, JW Harden. 2008.
Interactive effects of wildfire and permafrost on microbial communities and soil processes in an Alaskan black spruce forest. (see Applications)
Global Change Biology 14: 1-12.

Cristescu SM, ST Persijn, S te Lintel Hekkert, FJM Harren. 2008.
Laser-based systems for trace gas detection in life sciences.
Applied Physics B92: 343-349.

Vigano I, H van Weelden, R Holzinger, F Keppler, T Röckmann. 2008.
Effects of UV radiation and temperature on the emission of methane from plant biomass and structural components.
Biogeosciences Discussions 5: 243-270.

Larsen T, A Gorissen, PH Krogh, M Ventura, J Magid. 2007.
Assimilation dynamics of soil carbon and nitrogen by wheat roots and Collembola.
Plant and Soil 295: 253-264. Ask a reprint

Dueck TA, R. de Visser, H Poorter, S Persijn, A Gorissen, W de Visser, A Schapendonk, J Verhagen, J Snel, FJM. Harren, AKY Ngai, F Verstappen, H Bouwmeester, LACJ Voesenek, A van der Werf. 2007. (see Applications)
No evidence for substantial aerobic methane emission by terrestrial plants: A 13C-labelling approach.
New Phytologist 175: 29-35. Ask a reprint

Dieleman JA. 2006. (see Applications)
Assimilate distribution in cucumber (Dutch).
Gewasnieuws komkommer 9(1): 2.

Kovatcheva-Datchary P, M Egbert, A Maathuis, H Smidt, WM de Vos, K Venema. 2005.
Which bacteria metabolise starch in the human colon?
Poster presentation Biomedicine in the Post-Genomic Era, Dec 1-3, Mexico City.