Publications based on IsoLife‘s products or labelling services
Fernández-del-Río L, E Soubeyrand, GJ Basset, CF Clarke. 2020.
Metabolism of the flavonol kaempferol in kidney cells liberates the B-ring to enter coenzyme Q biosynthesis.
Molecules 25: 2955.
Liebmann P, P Wordell-Dietrich, K Kalbitz, R Mikutta, F Kalks, A Don, SK Woche, LR Dsilva, G Guggenberger. 2020.
Relevance of aboveground litter for soil organic matter formation – a soil profile perspective.
Biogeosciences 17: 3099 – 3113.
Gázquez A, MT Prieto-Sánchez, JE Blanco-Carnero, M Ruíz-Palacios, A Nieto, D van Harskamp, JE Oosterink, H Schierbeek, JB van Goudoever, H Demmelmair, B Koletzko, E Larqué. 2020.
Altered materno-fetal transfer of 13C-polyunsaturated fatty acids in obese pregnant women.
Clinical Nutrition 39: 1101-1107.
Yu J. 2020.
Characterization of tropical agricultural soil microbiomes after biochar amendment.
PhD Thesis. Arizona State University.
Robertson T. 2020.
Effects of chilling and reheating a starchy carbohydrate meal on the postprandial glycaemic response.
In: Fielding B, B Griffin, W Hall, L Hodson, R Antoni, A Umpleby, T Robertson, T Preston, M Brook, K Pinnick, eds. Report of a member-led meeting: How stable isotope techniques can enhance human nutrition research. Proceedings of the Nutrition Society, 4. doi:10.1017/S0029665120007016.
Havlik J, V Marinello, A Gardyne, M Hou, W Mullen, DJ Morrison, T Preston, E Combet, CA Edwards. 2020.
Dietary fibres differentially impact on the production of phenolic acids from rutin in an in vitro fermentation model of the human gut microbiota.
Nutrients 12: 1577.
Najera F, MA Dippold, J Boy, O Seguel, M Koester, S Stock, C Merino, Y Kuzyakov, F Matus. 2020.
Effects of drying/rewetting on soil aggregate dynamics and implications for organic matter turnover.
Biology and Fertility of Soils doi.org/10.1007/s00374-020-01469-6.
Vieira S, J Sikorski, A Gebala, RS Boeddinghaus, S Marhan, T Rennert, E Kandeler, J Overmann. 2020.
Bacterial colonization of minerals in grassland soils is selective and highly dynamic.
Environmental Microbiology 22: 917–933.
Van Erven G. 2020.
Quantitative mapping of lignin – Comprehensive insight into fungal delignification of plant biomass.
PhD Thesis. Wageningen University.
Kalks F, P Liebmann, P Wordell-Dietrich, G Guggenberger, K Kalbitz, R Mikutta, M Helfrich, A Don. 2020.
Fate and stability of dissolved organic carbon in topsoils and subsoils under beech forests.
Biogeochemistry 148: 111–128.
Chen X, X Ye, W Chu, DC Olk, X Cao, K Schmidt-Rohr, L Zhang, ML Thompson, J Mao, H Gao. 2020.
Formation of char-like, fused-ring aromatic structures from a nonpyrogenic pathway during decomposition of wheat straw.
Journal of Agricultural and Food Chemistry 68: 2607-2614.
Mukarakate C, K Orton, Y Kim, S Dell’Orco, CA Farberow, S Kim, MJ Watson, RM Baldwin, KA Magrini. 2020.
Isotopic studies for tracking biogenic carbon during co-processing of biomass and vacuum gas oil.
ACS Sustainable Chemistry & Engineering 8: 2652-2664.
Liles MR, Kloepper J. 2020.
Use of pectin or pectin-related saccharides to enhance efficacy of plant growth-promoting rhizobacteria (pgpr) strains for promoting growth and health in plants and animals.
United States Patent Application 20200009200 A1.
Moore JAM, BN Sulman, MA Mayes, CM Patterson, AT Classen. 2020.
Plant roots stimulate the decomposition of complex, but not simple, soil carbon.
Functional Ecology 34: 899–910.
Schlicker L, HM Boers, CA Dudek, G Zhao, A Barua, JP Trezzi, M Meyer-Hermann, DM Jacobs, K Hiller. 2019.
Postprandial metabolic effects of fiber mixes revealed by in vivo stable isotope labeling in humans.
Metabolites 9: 91.
Li Z, Q Yao, X Guo, A Crits-Christoph, MA Mayes, W Judson Hervey IV, SL Lebeis, JF Banfield, GB Hurst, RL Hettich, C Pan. 2019.
Genome-resolved proteomic Stable Isotope Probing of soil microbial communities using 13CO2 and 13C-methanol.
Frontiers in Microbiology 15: 2706.
Terrett OM, JJ Lyczakowski, L Yu, D Luga, WT Franks, SP Brown, R Dupree, P Dupree. 2019.
Molecular architecture of softwood revealed by solid-state NMR.
NATURE Communications 10: 4978.
Fernández-Calleja JMS, LMS Bouwman, HJM Swarts, A Oosting, J Keijer, EM van Schothorst. 2019.
Extended indirect calorimetry with isotopic CO2 sensors for prolonged and continuous quantification of exogenous vs. total substrate oxidation in mice.
NATURE – Scientific Reports 9: 11507.
Fernández-Calleja JMS. 2019.
Extended indirect calorimetry as a physiological phenotyping tool in mouse nutritional intervention studies, with a focus on metabolic programming by starches.
PhD Thesis. Wageningen University.
Nayan N, G van Erven, MA Kabel, ASM Sonnenberg, WH Hendriks, JW Cone. 2019.
Evaluation of fungal degradation of wheat straw cell wall using different analytical methods from ruminant nutrition perspective.
Journal of the Science of Food and Agriculture 99: 4054–4062.
Coonan EC, CA Kirkby, JA Kirkegaard, MR Amidy, CL Strong, AE Richardson. 2019.
Lime and nutrient addition affects the dynamics and fractions of soil carbon in a short-term incubation study with 13C-labeled wheat straw.
Soil Science 184: 43–51.
Van Erven G, R de Visser, P de Waard, WJH van Berkel, MA Kabel. 2019.
Uniformly 13C labeled lignin internal standards for quantitative pyrolysis−GC−MS analysis of grass and wood.
ACS Sustainable Chemistry & Engineering 7: 20070−20076.
Tsugawa H. 2019.
Interpretation of MS/MS spectra and structure estimation of natural products (in Japanese).
CICSJ Bulletin 37: 45-50.
Fernández-Calleja JMS, LMS Bouwman, HJM Swarts, N Billecke, A Oosting, J Keijer, EM van Schothorst. 2019.
A lowly digestible-starch diet after weaning enhances exogenous glucose oxidation rate in female, but not in male, mice.
Nutrients 11: 2242, doi.org/10.3390/nu11092242.
Weis S, S Schnell, M Egert. 2019.
RNA-Based Stable Isotope Probing (RNA-SIP) in the gut environment.
In: Dumont MG, M Hernández García, eds. Stable Isotope Probing – Methods and Protocols. Methods in Molecular Biology vol. 2046. Humana, New York, NY.
Preusser S, C Poll, S Marhan, G Angst, CW Mueller, J Bachmann, E Kandeler. 2019.
Fungi and bacteria respond differently to changing environmental conditions within a soil profile.
Soil Biology and Biochemistry 137: 107543.
Vieira S, J Sikorski, A Gebala, RS Boeddinghaus, S Marhan, T Rennert, E Kandeler, J Overmann. 2019.
Bacterial colonization of minerals in grassland soils is selective and highly dynamic.
Environmental Microbiology doi.org/10.1111/1462-2920.14751.
Kandeler E, A Gebala, RS Boeddinghaus, K Müller, T Rennert, M Soares, J Rousk, S Marhan S. 2019.
The mineralosphere – Succession and physiology of bacteria and fungicolonising pristine minerals in grassland soils under different land-use intensities.
Soil Biology and Biochemistry 136: 107534.
Wieczorek AS, O Schmidt, A Chatzinotas, M von Bergen, A Gorissen, S Kolb. 2019.
Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation – a case study.
Frontiers in Microbiology 10: 1293.
Graeber D, B Gücker, R Wild, NS Wells, C Anlanger, N Kamjunke, H Norf, C Schmidt, M Brauns. 2019.
Biofilm-specific uptake does not explain differences in whole-stream DOC tracer uptake between a forest and an agricultural stream.
Biogeochemistry 144: 85–101.
Vlahakis C, J Hazebroek, C Beecher, F de Jong. 2019.
Isotopic ratio outlier analysis improves metabolomics prediction of nitrogen treatment in maize.
Phytochemistry 164: 130-135.
Gázquez A, MT Prieto-Sánchez, JE Blanco-Carnero, D van Harskamp, S Perazzolo, JE Oosterink, H Demmelmair, H Schierbeek, BG Sengers, RM Lewis, JB van Goudoever, B Koletzko, E Larqué. 2019.
In vivo kinetic study of materno-fetal fatty acid transfer in obese and normal weight pregnant women.
The Journal of Physiology 597: 4959–4973.
Dvergedal H, J Ødegård, M Øverland, LT Mydland, G Klemetsdal. 2019.
Selection for feed efficiency in Atlantic salmon using individual indicator traits based on stable isotope profiling.
Genetics Selection Evolution 51: 13.
Tsugawa H, R Nakabayashi, T Mori, Y Yamada, M Takahashi, A Rai, R Sugiyama, H Yamamoto, T Nakaya, M Yamazaki, R Kooke, JA Bac-Molenaar, N Oztolan-Erol, JJB Keurentjes, M Arita , K Saito. 2019.
A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.
NATURE Methods 16: 295-298.
Taubert M, J Stähly, S Kolb, K Küsel. 2019.
Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation.
PLoS ONE 14: e0212937. doi.org/10.1371/journal.pone.0212937.
Azzout-Marniche D, C Chaumontet, J Piedcoq, N Khodorova, G Fromentin, D Tomé, C Gaudichon, PC Even. 2019.
High pancreatic amylase expression promotes adiposity in obesity-prone carbohydrate-sensitive rats.
The Journal of Nutrition doi.org/10.1093/jn/nxy262.
Kang X, A Kirui, MC Dickwella Widanage, F Mentink-Vigier, DJ Cosgrove, T Wang. 2019.
Lignin-polysaccharide interactions in plant secondary cell walls revealed by solid-state NMR.
NATURE Communications 10: 347.
Kaplan H, S Ratering, P Felix-Henningsen, S Schnell. 2019.
Stability of in situ immobilization of trace metals with different amendments revealed by microbial 13C-labelled wheat root decomposition and efflux-mediated metal resistance of soil bacteria.
Science of The Total Environment 659: 1082-1089.
Moreno JL, IF Torres, C García, R López-Mondéjar, F Bastida. 2019.
Land use shapes the resistance of the soil microbial community and the C cycling response to drought in a semi-arid area.
Science of The Total Environment 648: 1018-1030.
Wild B, J Li, J Pihlblad, P Bengtson, T Rütting. 2019.
Decoupling of priming and microbial N mining during a short-term soil incubation.
Soil Biology and Biochemistry 129: 71-79.
Hicks LC, P Meir, AT Nottingham, DS Reay, AW Stott, N Salinas, J Whitaker. 2019.
Carbon and nitrogen inputs differentially affect priming of soil organic matter in tropical lowland and montane soils.
Soil Biology and Biochemistry 129: 212-222.
Miller RN. 2018.
Quantitative assessment of bacterial and fungal degradation of glucose and cellulose.
MsC Thesis. West Virginia University.
Maarastawi SA, Frindte K, Geer R, Kröber E, Knief C. 2018.
Temporal dynamics and compartment specific rice straw degradation in bulk soil and the rhizosphere of maize.
Soil Biology and Biochemistry 127: 200-212.
Pinta MN, I Montoliu, A-M Aura, T Seppänen-Laakso, D Barron, S Moco. 2018.
In vitro gut metabolism of [U-13C]-quinic acid, the other hydrolysis product of chlorogenic acid.
Molecular Nutrition & Food Research 62: 1800396.
De Bruin HM. 2018.
Slowing starch digestibility in foods: Formulation, substantiation and metabolic effects related to health.
PhD Thesis. University of Groningen.
Di Lonardo DP, M Manrubi, W de Boer, H Zweers, GF Veen, A Van der Wal. 2018.
Relationship between home-field advantage of litter decomposition and priming of soil organic matter.
Soil Biology and Biochemistry 126: 49–56.
Ning P, R Soong, W Bermel, D Lane, MJ Simpson, AJ Simpson. 2018.
13C quantification in heterogeneous multiphase natural samples by CMP-NMR using stepped decoupling.
Analytical and Bioanalytical Chemistry 410: 7055–7065.
Kang X, A Kirui, A Muszyński, MC Dickwella Widanage, A Chen, P Azadi, P Wang, F Mentink-Vigier, T Wang. 2018.
Molecular architecture of fungal cell walls revealed by solid-state NMR.
NATURE Communications 9: 2747.
Wieczorek A. 2018.
Trophic interactions of a chitin-degrading microbiome of an aerated agricultural soil.
PhD Thesis. University of Bayreuth.
Beek, van der CM, EE Canfora, AM Kip, SHM Gorissen, SWM Olde Damink, HM van Eijk, JJ Holst, EE Blaak, CHC Dejong, K Lenaerts. 2018.
The prebiotic inulin improves substrate metabolism and promotes short-chain fatty acid production in overweight to obese men.
Metabolism Clinical and Experimental 87: 25-35.
Egert M, S Weis, S Schnell. 2018.
RNA-based stable isotope probing (RNA-SIP) to unravel intestinal host-microbe Interactions.
Methods 149: 25-30.
Aye NS, CR Butterly, PWG Sale, C Tang. 2018.
Interactive effects of initial pH and nitrogen status on soil organic carbon priming by glucose and lignocellulose.
Soil Biology and Biochemistry 123: 33-44.
Leinemann T. 2018.
Origin and fate of dissolved organic matter in the subsoil.
PhD Thesis. Leibniz University of Hannover.
Cao X, K Schmidt-Rohr. 2018.
Abundant nonprotonated aromatic and oxygen-bonded carbons make humic substances distinct from biopolymers.
Environmental Science and Technology Letters 5: 476-480.
López-Mondéjar R, V Brabcová, M Štursová, A Davidová, J Jansa, T Cajthaml, P Baldrian. 2018.
Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling.
NATURE – The ISME Journal 12: 1768–1778.
Herrmann E, W Young, V Reichert-Grimm, S Weis, CU Riedel, D Rosendale, H Stoklosinski, M Hunt, M Egert. 2018.
In vivo assessment of resistant starch degradation by the caecal microbiota of mice using RNA-based Stable Isotope Probing—A proof-of-principle study.
Nutrients 10: 179.
Leinemann T, S Preusser, R Mikutta, K Kalbitz, C Cerli, C Höschen, CW Mueller, E Kandeler, G Guggenberger. 2018.
Multiple exchange processes on mineral surfaces control the transport of dissolved organic matter through soil profiles.
Soil Biology and Biochemistry 118: 79–90.
Trevathan-Tackett SM, ACG Thomson, PJ Ralph, PI Macreadie. 2018.
Fresh carbon inputs to seagrass sediments induce variable microbial priming responses.
Science of the Total Environment 621: 663–669.
Beek, van der CM. 2017.
The gut in control of health and disease: unraveling the role of short-chain fatty acids in human metabolism.
PhD Thesis. Maastricht University.
Segura JH, MB Nilsson, M Haei, T Sparrman, JP Mikkola, J Gräsvik, J Schleucher, MG Öquist. 2017.
Microbial mineralization of cellulose in frozen soils.
NATURE Communications 8: 1154.
Boers HM, TH van Dijk, H Hiemstra, A-R Hoogenraad, DJ Mela, HPF Peters, RJ Vonk, MG Priebe. 2017.
Effect of fibre additions to flatbread flour mixes on glucose kinetics: a randomised controlled trial.
British Journal of Nutrition 118: 777-787.
Wagner K, MM Bengtsson, RH Findlay, TJ Battin, AJ Ulseth. 2017.
High light intensity mediates a shift from allochthonous to autochthonous carbon use in phototrophic stream biofilms.
Journal of Geophysical Research: Biogeosciences 122: 1806–1820.
Alonso-Pernas P, S Bartram, EM Arias-Cordero, AL Novoselov, L Halty-deLeon, Y Shao, W Boland. 2017.
In vivo isotopic labeling of symbiotic bacteria involved in cellulose degradation and nitrogen recycling within the gut of the forest cockchafer (Melolontha hippocastani).
Frontiers in Microbiology 10: 1970.
Herzog CP. 2017.
Growth and decay of Scots pine roots.
PhD Thesis. ETH Zürich.
Van Erven G, R de Visser, DWH Merkx, W Strolenberg, P de Gijsel, H Gruppen, MA Kabel. 2017.
Quantification of lignin and its structural features in plant biomass using 13C lignin as internal standard for pyrolysis-GC-SIM-MS.
Analytical Chemistry 89: 10907–10916.
Mäkelä A, U Witte, P Archambault. 2017.
Benthic macroinfaunal community structure, resource utilisation and trophic relationships in two Canadian Arctic Archipelago polynyas.
PLoS ONE 12(8): e0183034. https://doi.org/10.1371/journal.pone.0183034.
Müller K, S Marhan, E Kandeler, C Poll. 2017.
Carbon flow from litter through soil microorganisms: From incorporation rates to mean residence times in bacteria and fungi.
Soil Biology and Biochemistry 115: 187-196.
Wilhelm RC, E Cardenas, H Leung, K Maas, M Hartmann, A Hahn, S Hallam, WW Mohn. 2017.
Data Descriptor: A metagenomics survey of forest soil microbial communities more than a decade after timber harvesting.
NATURE Scientific Data doi:10.1038/sdata.2017.92.
Herrmann E, W Young, D Rosendale, R Conrad, CU Riedel, M Egert. 2017.
Determination of resistant starch assimilating bacteria in fecal samples of mice by in vitro RNA-based Stable Isotope Probing.
Frontiers in Microbiology 8: 1331.
Mäkelä A, U Witte, P Archambault. 2017.
Ice algae versus phytoplankton: resource utilization by Arctic deep sea macroinfauna revealed through isotope labelling experiments.
Marine Ecology Progress Papers 572: 1–18.
Fortier-McGill B, RD Majumdar, L Lam, R Soong, YL Mobarhan, A Sutrisno, R de Visser, MJ Simpson, H Wheeler, M Campbell, A Gorissen, AJ Simpson. 2017.
Comprehensive multiphase (CMP) NMR monitoring of the structural changes and molecular flux within a growing seed.
Journal of Agricultural and Food Chemistry: 65: 6779–6788.
Carrier M, M Windt, B Ziegler, J Appelt, B Saake, D Meier, A Bridgwater. 2017.
Quantitative insights into the fast pyrolysis of extracted cellulose, hemicelluloses and lignin.
Bastida F, IF Torres, T Hernández, C García. 2017.
The impacts of organic amendments: Do they confer stability against drought on the soil microbial community?
Soil Biology and Biochemistry 113: 173-183.
Mulat DG, F Mosbæk, AJ Warda, D Polag, M Greule, F Keppler, JL Nielsen, A Feilberg. 2017.
Exogenous addition of H2 for an in situ biogas upgrading through biological reduction of carbon dioxide into methane.
Waste Management: 68: 146-156.
Fernández-del-Río L, A Nag, E Gutiérrez Casado, J Ariza, AM Awad, AI Joseph, O Kwon, E Verdin, R de Cabo, C Schneider, JZ Torres, MI Burón, CF Clarke, JM Villalba. 2017.
Kaempferol increases levels of coenzyme Q in kidney cells and serves as a biosynthetic ring precursor.
Free Radical Biology and Medicine: 110: 176-187.
Cheng L, N Zhang, M Yuan, J Xiao, Y Qin, Y Deng, Q Tu, K Xue, JD Van Nostrand, L Wu, Z He, X Zhou, MB Leigh, KT Konstantinidis, EAG Schuur, Y Luo, JM Tiedje, J Zhou. 2017.
Warming enhances old organic carbon decomposition through altering functional microbial communities.
NATURE – The ISME Journal 11: 1825–1835.
Wakerley DW, MF Kuehnel, KL Orchard, KH Ly, TE Rosser, E Reisner. 2017.
Solar-driven reforming of lignocellulose to H2 with a CdS/CdOx photocatalyst.
NATURE Energy 2: 17021.
Deroover L, J Verspreet, A Luypaerts, G Vandermeulen, CM Courtin, K Verbeke. 2017.
Wheat bran does not affect postprandial plasma short-chain fatty acids from 13C-inulin fermentation in healthy subjects.
Nutrients 9: 83.
Preusser S, S Marhan, C Poll, E Kandeler. 2017.
Microbial community response to changes in substrate availability and habitat conditions in a reciprocal subsoil transfer experiment.
Soil Biology and Biochemistry 105: 138-152.
Turner S, S Meyer-Stüve, A Schippers, G Guggenberger, F Schaarschmidt, B Wild, A Richter, R Dohrmann, R Mikutta. 2017.
Microbial utilization of mineral-associated nitrogen in soils.
Soil Biology and Biochemistry 104: 185-196.
Orgill SE, JR Condon, CA Kirkby, BA Orchard, MK Conyers, RSB Greene, BW Murphy. 2017.
Soil with high organic carbon concentration continues to sequester carbon with increasing carbon inputs.
Geoderma 285: 151-163.
Öquist MG, B Erhagen, M Haei, T Sparrman, U Ilstedt, J Schleucher, MB Nilsson. 2017.
The effect of temperature and substrate quality on the carbon use efficiency of saprotrophic decomposition.
Plant and Soil 414: 113–125.
Scherbl D, M. Renouf, C. Marmet, L. Poquet, I. Cristiani, S. Dahbane, S. Emady-Azar, J. Sauser, J. Galan, F. Dionisi, E. Richling. 2017.
Breakfast consumption induces retarded release of chlorogenic acid metabolites in humans.
European Food Research and Technology 243: 791-806.
Nakabayashi R, K Saito. 2017.
Ultrahigh resolution metabolomics for S-containing metabolites.
Current Opinion in Biotechnology 43: 8-16.
Guhr A. 2016.
Adaptions of saprotrophic filamentous fungi to drought stress in soils: Hydraulic redistribution through mycelia networks and transcriptional responses.
PhD Thesis. University of Bayreuth.
Zabela V, C Sampath, M Oufir, F Moradi-Afrapoli, V Butterweck, M Hamburger. 2016.
Pharmacokinetics of dietary kaempferol and its metabolite 4-hydroxyphenylacetic acid in rats.
Fitoterapia 115: 189-197.
Guhr A , C Marzini, W Borken, C Poll, E Matzner. 2016.
Effect of water redistribution by two distinct saprotrophic fungi on carbon mineralization and nitrogen translocation in dry soil.
Soil Biology and Biochemistry 103: 380-387.
Moradi-Afrapoli F, M Oufir, FR Walter, MA Deli, M Smiesko, V Zabela, V Butterwecke, M Hamburger. 2016.
Validation of UHPLC–MS/MS methods for the determination of kaempferol and its metabolite 4-hydroxyphenyl acetic acid, and application to in vitro blood-brain barrier and intestinal drug permeability studies.
Journal of Pharmaceutical and Biomedical Analysis 128: 264-274.
Heijboer A, HFM ten Berge, PC de Ruiter, H Bracht Jørgensen, GA Kowalchuk, J Bloem. 2016.
Plant biomass, soil microbial community structure and nitrogen cycling under different organic amendment regimes; a 15N tracer-based approach.
Applied Soil Ecology 107: 251-260.
Wild B, N Gentsch, P Čapek, K Diáková, RJ Eloy Alves, J Bárta, A Gittel, G Hugelius, A Knoltsch, P Kuhry, N Lashchinskiy, R Mikutta4, J Palmtag, C Schleper, J Schnecker, O Shibistova, M Takriti VL Torsvik, T Urich, M Watzka, H Šantrůčková, G Guggenberger, A Richter. 2016.
Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils.
NATURE – Scientific Reports 6, Article number: 25607, doi: 10.1038/srep25607.
Ward ND, TS Bianchi, HO Sawakuchi, W Gagne-Maynard, AC Cunha, DC Brito, V Neu, A de Matos Valerio, R da Silva, AV Krusche, JE Richey, RG Keil. 2016.
The reactivity of plant-derived organic matter and the potential importance of priming effects along the lower Amazon River.
Journal of Geophysical Research 121: 1522-1539.
Kramer S, D Dibbern, J Moll, M Huenninghaus, R Koller, D Krueger, S Marhan, T Urich, T Wubet, M Bonkowski, F Buscot, T Lueders, E Kandeler. 2016.
Resource partitioning between bacteria, fungi and protists in the detritusphere of an agricultural soil.
Frontiers in Microbiology 7: 1524.
Doppler M, B Kluger, C Bueschl, C Schneider, R Krska, S Delcambre, K Hiller, M Lemmens, R Schuhmacher. 2016
Stable isotope-assisted evaluation of different extraction solvents for untargeted metabolomics of plants.
International Journal of Molecular Sciences 17: 1017.
Warren CR. 2016.
Simultaneous efflux and uptake of metabolites by roots of wheat.
Plant and Soil 406: 359–374.
Rime T, M Hartmann, B Stierli, AM Anesio, B Frey. 2016.
Assimilation of microbial and plant carbon by active prokaryotic and fungal populations in glacial forefields.
Soil Biology and Biochemistry 98: 30-41.
Lux G. 2016.
Einfluss organischer Düngung auf Ertrag, symbiotische N2-Fixierung und Nährstoffaufnahme von Saatplatterbse (Lathyrus sativus L.), Ackerbohne (Vicia faba L.) und Rotklee (Trifolium pratense L.) sowie auf Ertrag eines nachfolgenden Winterweizens (Triticum aestivum L.).
PhD Thesis. Humboldt University of Berlin.
Vetrovský T, M Štursová, P Baldrian. 2016.
Fungal communities in soils: Soil organic matter degradation.
Methods in Molecular Biology (Microbial Environmental Genomics (MEG)) 1399: 89-100.
Butts CA, G Paturi, MH Tavendale, D Hedderley, H Stoklosinski, T Herath, D Rosendale, N Roy, JA Monro, J Ansell. 2016.
The fate of 13C-labelled and non-labelled inulin predisposed to large bowel fermentation in rats.
Food and Function 7: 1825-1832.
Verbruggen E, J Jansa, EC Hammer, MC Rillig. 2016.
Do arbuscular mycorrhizal fungi stabilize litter-derived carbon in soil?
Journal of Ecology 104: 261-269.
Leung HTC, KR Maas, RC Wilhelm, WW Mohn. 2016.
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils.
NATURE – The ISME Journal 10: 363-375.
Gontikaki E, B. Thornton, T Cornulier, U Witte. 2015.
Occurrence of priming in the degradation of lignocellulose in marine sediments.
PLoS ONE 10: e0143917. doi:10.1371/journal.pone.0143917.
Nakabayashi R, H Tsugawa, M Kitajima, H Takayama, K Saito. 2015.
Boosting sensitivity in liquid chromatography–Fourier transform ion cyclotron resonance–Tandem mass spectrometry for product ion analysis of monoterpene indole alkaloids.
Frontiers in Plant Science 6: 1127.
Guhr A, W Borken, M Spohn, E Matzner. 2015.
Redistribution of soil water by a saprotrophic fungus enhances carbon mineralization.
PNAS 112: 14647-14651.
Musacchi S, S Serra, M Noferini, F Gagliardi, D Bucci, G. Pagliuca, E Zironi. 2015.
Study of the Relation between Peach Ripening and Phenolic Compounds.
Proc. VIIIth Intl. Peach Symposium (Xiloyannis C et al., eds). ISHS Acta Horticulturae 1084.
Read D, WE Huang, AS Whiteley. 2015.
Single Cell Microbial Ecophysiology with Raman-FISH.
Hydrocarbon and Lipid Microbiology Protocols (McGenity TJ et al., eds), Springer Protocols Handbooks, doi 10.1007/8623_2015_153 .
Oberli M, A Marsset-Baglieri, G Airinei, V Santé-Lhoutellier, N Khodorova, D Rémond, A Foucault-Simonin, J Piedcoq, D Tomé, G Fromentin, R Benamouzig, C Gaudichon. 2015.
High true ileal digestibility but not postprandial utilization of nitrogen from bovine meat protein in humans is moderately decreased by high-temperature, long-duration cooking.
The Journal of Nutrition 145: 2221-2228.
Torres Bocero IF. 2015.
Dynamics of carbon in degraded semiarid soils: effects of organic amendments and associated soil microbial communities.
PhD Thesis. University of Murcia.
Eichorst SA, F Strasser, T Woyke, A Schintlmeister, M Wagner, D Woebken. 2015.
Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.
FEMS Microbiology Ecology doi.org/10.1093/femsec/fiv106.
Foston M, HL Trajano, R Samuel, CE Wyman, J He, AJ Ragauskas. 2015.
Recalcitrance and structural analysis by water-only flowthrough pretreatment of 13C enriched corn stover stem.
Bioresource Technology 197: 128-136.
De Jong F, C Beecher, M Akond, J Ericson, MA Babar. 2015.
Metabolic effect of drought stress during the grain filling growth stage in wheat measured by Isotopic Ratio Outlier Analysis(IROA).
Mulat DG, A Feilberg. 2015.
GC/MS method for determining carbon isotope enrichment and concentration of underivatized short-chain fatty acids by direct aqueous solution injection of biogas digester samples.
Talanta 143: 56-63.
Dupree R, TJ Simmons, J Mortimer, D Patel, D Iuga, SP Brown, P Dupree. 2015.
Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional 13C solid-state NMR spectroscopy.
Biochemistry 54: 2335-2345.
German DP, SD Allison. 2015.
Drying and substrate concentrations interact to inhibit decomposition of carbon substrates added to combusted Inceptisols from a boreal forest.
Biology and Fertility of Soils 51: 525-533.
Hünninghaus MC. 2015.
Protists in the soil food web of an arable field: Their density, taxonomic composition and functional role in carbon flux.
PhD Thesis. University of Cologne.
Van Ruth SM, R de Visser. 2015.
Provenancing flower bulbs by analytical fingerprinting: Convallaria majalis.
Agriculture 5: 17-29.
Dorado C, CA Mullen, AA Boateng. 2015.
Origin of carbon in aromatic and olefin products derived from HZSM-5 catalyzed co-pyrolysis of cellulose and plastics via isotopic labeling.
Applied Catalysis B: Environmental 162: 338-345.
Bengtsson MM, K Wagner, NR Burns, ER Herberg, W Wanek, LA Kaplan, TJ Battin. 2014.
No evidence of aquatic priming effects in hyporheic zone microcosms.
Nature Scientific Reports 4, Article number: 5187.
Whitaker J, N Ostle, NP McNamara, AT Nottingham, RD Bardgett, AW Stott, N Salinas, AJQ Ccahuana, P Meir. 2014.
Microbial carbon mineralization in tropical lowland and montane forest soils of Peru.
Frontiers in Microbiology 5: 720.
Dibbern D. 2014.
Key prokaryotic populations contributing to carbon flow in an agricultural soil food web.
PhD Thesis. Technical University München.
Bücker M, C Jäger, D Pfeifer, B Unger. 2014.
Evidence of Si–O–C bonds in cellulosic materials modified by sol–gel-derived silica.
Wood Science Technology 48: 1033-1047.
Weidel E, M Schantz, E Richling. 2014.
A rapid method for quantifying chlorogenic acid levels in potato samples.
Journal of AOAC International 97: 902-907.
Wild B, J Schnecker, RJE Alves, P Barsukov, J Bárta, P Capek, N Gentsch, A Gittel, G Guggenberger, N Lashchinskiy, R Mikutta, O Rusalimova, H Santrucková, O Shibistova, T Urich, M Wazka, G Zrazhevskaya, A Richter. 2014.
Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil.
Soil Biology and Biochemistry 75: 143–151.
Darjany LE, CR Whitcraft, JG Dillon. 2014.
Lignocellulose-responsive bacteria in a southern California salt marsh identified by stable isotope probing.
Frontiers in Microbiology 5: 263.
Schmidt O, MA Horn, S Kolb, HL Drake. 2014.
Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil.
Environmental Microbiology 17: 720-734.
Kramer S. 2014.
Effects of resource availability and quality on soil microorganisms and their carbon assimilation.
PhD Thesis. University Hohenheim.
Frost G, ML Sleeth, M Sahuri-Arisoylu, B Lizarbe, S Cerdan, L Brody, J Anastasovska, S Ghourab, M Hankir, S Zhang, D Carling, JR Swann, G Gibson, A Viardot, D Morrison, EL Thomas, JD Bell. 2014.
The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism.
NATURE Communications 5: 3611.
Strasser F. 2014.
Investigating complex carbon degradation in a beech forest soil and first insights into the application of single-cell methods to detect active microorganisms in soil systems.
MsC Thesis. University of Vienna.
Leung H. 2014.
Long-term effects of timber harvesting on cellulolytic microbial communities in North American coniferous forest soils.
MsC Thesis. University of British Columbia.
Whitaker J, N Ostle, AT Nottingham, A Ccahuana, N Salinas, RD Bardgett, P Meir, NP McNamara. 2014.
Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient.
Journal of Ecology 102: 1058-1071.
Tannock GW, B Lawley, K Munro, IM Sims, J Lee, CA Butts, N Roy. 2014.
RNA-stable isotope probing (RNA-SIP) shows carbon utilization from inulin by specific bacterial populations in the large bowel of rats.
Applied and Environmental Microbiology 80: 2240-2247.
Torres IF, F Bastida, T Hernández, P Bombach, HH Richnow, C García. 2014.
The role of lignin and cellulose in the carbon-cycling of degraded soils under semiarid climate and their relation to microbial biomass.
Soil Biology and Biochemistry 75: 152-160.
Wu Y, R Conrad. 2014.
Ammonia oxidation dependent growth of group I.1b thaumarchaeota in acidic red soil microcosms.
FEMS Microbiology Ecology 89: 127-134.
Johnson RL, K Schmidt-Rohr. 2014.
Quantitative solid-state 13C NMR with signal enhancement by multiple cross polarization.
Journal of Magnetic Resonance 239: 44-49.
Warner D, J Dijkstra, WH Hendriks, WF Pellikaan. 2014.
Stable isotope-labelled feed nutrients to assess nutrient-specific feed passage kinetics in ruminants.
Journal of the Science of Food and Agriculture 94: 819-824.
Kirkby CA, AE Richardson, LJ Wade, JB Passioura, GD Batten, C Blanchard, JA Kirkegaard. 2014.
Nutrient availability limits carbon sequestration in arable soils.
Soil Biology and Biochemistry 68: 402-409.
Lam L, R Soong, A Sutrisno, R de Visser, MJ Simpson, H Wheeler, M Campbell, WE Maas, M Fey, A Gorissen, H Hutchins, B Andrew, JO Struppe, S Krishnamurthy, R Kumar, M Monette, H Stronks, A Hume, AJ Simpson. 2014.
Comprehensive multiphase NMR spectroscopy of intact 13C labeled seeds.
Journal of Agricultural and Food Chemistry 62: 407-415.
Chatzinotas A, S Schellenberger, K Glaser, S Kolb. 2013.
Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil.
Applied and Environmental Biology 79: 5777-5781.
Carpenter KJ, PK Weber, ML Davisson, J Pett-Ridge, MI Haverty, PJ Keeling. 2013.
Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: Methods for in situ functional and ecological studies of uncultivable microbes.
Microscopy and Microanalysis 19: 1490-1501.
Warner D. 2013.
Passage of feed in dairy cows : use of stable isotopes to estimate passage kinetics through the digestive tract of dairy cows.
PhD Thesis. Wageningen University.
Bueschl C, B Kluger, M Lemmens, G Adam, G Wiesenberger, V Maschietto, A Marocco, J Strauss, S Bödi, GG Thallinger, R Krska, R Schuhmacher. 2013.
A novel stable isotope labelling assisted workflow for improved untargeted LC–HRMS based metabolomics research.
Metabolomics 10: 754-769.
Warner D, LMM Ferreira, MJH Breuer, J Dijkstra, WF Pellikaan. 2013.
Stable isotope labelled plant wax n-alkanes to determine digesta passage through the gastrointestinal tract of ruminants.
PLOS ONE 8: e75496.
Warner D, J Dijkstra, S Tamminga, WF Pellikaan. 2013.
Passage kinetics of concentrates in dairy cows measured with carbon isotopes.
Animal 7: 1935-1943.
Erhagen B. 2013.
Temperature Sensitivity of Soil Carbon Decomposition – Molecular Controls and Environmental Feedbacks
PhD Thesis. University of Umea.
Warner D, J Dijkstra, WH Hendriks, WF Pellikaan. 2013.
Passage kinetics of stable isotope labeled grass silage fibre and fibre-bound protein through the gastrointestinal tract of dairy cows.
Journal Dairy Science 96: 7904-7917.
Komatsu T, J Kikuchi. 2013.
Comprehensive signal assignment of 13C-labeled lignocellulose using multidimensional solution NMR and 13C chemical shift comparison with solid-state NMR.
Analytical Chemistry 85: 8857-8865.
Luz Cayuela M, P Kuikman, R Bakker, JW van Groenigen. 2013.
Tracking C and N dynamics and stabilization in soil amended with wheat residue and its corresponding bioethanol by-product: a 13C/15N study.
Global Change Biology Bioenergy 2: 201-213.
Warner D, J Dijkstra, WH Hendriks, WF Pellikaan. 2013.
Passage kinetics of 13C-labeled corn components through the gastrointestinal tract of dairy cows.
Journal Dairy Science 96: 5844–5858.
Komatsu T, J Kikuchi. 2013.
Selective signal detection in solid-state NMR using rotor-synchronized dipolar dephasing for the analysis of hemicellulose in lignocellulosic biomass.
The Journal of Physical Chemistry Letters 4: 2279−2283.
Nakabayashi R, Y Sawada, Y Yamada, M Suzuki, MY Hirai, T Sakurai, K Saito. 2013.
Combination of liquid chromatography−Fourier transform ion cyclotron resonance-Mass Spectrometry with 13C ‑labeling for chemical assignment of sulfur-containing metabolites in onion bulbs.
Analytical Chemistry 85: 1310-1315.
Hunter WR, A Jamieson, VAI Huvenne, U Witte. 2013.
Sediment community responses to marine vs. terrigenous organic matter in a submarine canyon.
Biogeosciences 10: 67–80.
Foston M, R Samuel, AJ Ragauskas. 2012.
13C cell wall enrichment and ionic liquid NMR analysis: progress towards a high-throughput detailed chemical analysis of the whole plant cell wall.
Analyst 137: 3904-3909.
Semenov AV, MC Pereira e Silva, A Szturc-Koetsier, H Schmitt, J Falcão Salles, JD van Elsas. 2012.
Impact of incorporated fresh 13C potato tissues on the bacterial and fungal community composition of soil.
Soil Biology and Biochemistry 49: 88-95.
Štursová M, L Žifčáková, MB Leigh, R Burgess, P Baldrian. 2012.
Cellulose utilisation in forest litter and soil: identification of bacterial and fungal decomposers.
FEMS Microbiology Ecology 80: 735-746.
Foston M, R Katahira, E Gjersing, MF Davis, AJ Ragauskas. 2012. (see Applications)
Solid-state selective 13C excitation and spin diffusion NMR to resolve spatial dimensions in plant cell walls.
Journal of Agricultural and Food Chemistry 60: 1419-1427.
Paul BK, IM Lubbers, JW van Groenigen. 2012.
Residue incorporation depth is a controlling factor of earth-worm induced nitrous oxide emissions.
Global Change Biology 18: 1141-1151.
Kiers TE, M Duhamel, Y Beesetty, JA Mensah, O Franken, E Verbruggen, CR Fellbaum, GA Kowalchuk, MM Hart, A Bago, TM Palmer, SA West, P Vandenkoornhuyse, J Jansa, H Bücking. 2011. (see Applications)
Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis.
SCIENCE 333: 880-882.
German, DP, SS Chacon, SD Allison. 2011.
Substrate concentration and enzyme allocation can affect rates of microbial decomposition.
Ecology 92: 1471-1480.
Hagl S, H Deusser, B Soyalan, C Janzowski, F Will, H Dietrich, F Albert, S Rohner, E Richling. 2011.
Colonic availability of polyphenols and D-(-)-quinic acid after apple smoothie consumption.
Molecular Nutrition & Food Research 55: 368-377.
Taylor DL, IC Herriott, KE Stone, JW McFarland, MG Booth, MB Leigh. 2010.
Structure and resilience of fungal communities in Alaskan boreal forest soils.
Canadian Journal of Forest Research 40: 1288–1301.
Kovatcheva-Datchary P. 2010.
Analyzing the functionality of the human Intestinal microbiota by stable isotope probing.
PhD Thesis Wageningen University.
Binsl TW, AA de Graaf, K Venema, J Heringa, A Maathuis, P de Waard, JHGM van Beek. 2010.
Measuring non-steady-state metabolic fluxes in starch-converting faecal microbiota in vitro.
Beneficial Microbes 1: 391-405.
Venema K, AA de Graaf, AJH Maathuis, P Kovatcheva-Datchary, H Smidt. 2010.
Fermentation in the large intestine unravelled using 13C-labelled substrates: implications for obesity and gut health.
In: Van der Kamp JW, Jones J, McCleary B, Topping D, eds. Dietary fibre: new frontiers for food and health: 539-554. Wageningen Acad. Publishers.
Nocentini C, B Guenet, E di Mattia, G Certini, G Bardoux, C Rumpel. 2010.
Charcoal mineralisation potential of microbial inocula from burned and unburned forest soil with and without substrate addition.
Soil Biology and Biochemistry 42: 1472-1478
May M, J Kuo, M Gray, I Knyazhansky, CT Tan. 2010.
Temperature zonal combustion reactor for the 15-nitrogen and 13-carbon isotopic determination of enriched biosynthetic materials.
Industrial and Engineering Chemical Research 49: 4036-4043.
Kovatcheva-Datchary P, M Egbert, A Maathuis, M Rajilic-Stojanovic, AA de Graaf, H Smidt, WM de Vos, K Venema. 2009 (Award winning publication).
Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing. (see Applications)
Environmental Microbiology 11: 914-926.
Bastias BA, IA Anderson, J Ignacio-Castro, PI Parkin, JI Prosser, JWG Cairney. 2009.
Influence of repeated prescribed burning on incorporation of 13C from cellulose by forest soil fungi as determined by RNA stable isotope probing. (see Applications)
Soil Biology and Biochemistry 41: 467-472.
Waldrop MP, JW Harden. 2008.
Interactive effects of wildfire and permafrost on microbial communities and soil processes in an Alaskan black spruce forest. (see Applications)
Global Change Biology 14: 1-12.
Cristescu SM, ST Persijn, S te Lintel Hekkert, FJM Harren. 2008.
Laser-based systems for trace gas detection in life sciences.
Applied Physics B 92: 343-349.
Vigano I, H van Weelden, R Holzinger, F Keppler, T Röckmann. 2008.
Effects of UV radiation and temperature on the emission of methane from plant biomass and structural components.
Biogeosciences Discussions 5: 243-270.
Dueck TA, R. de Visser, H Poorter, S Persijn, A Gorissen, W de Visser, A Schapendonk, J Verhagen, J Snel, FJM. Harren, AKY Ngai, F Verstappen, H Bouwmeester, LACJ Voesenek, A van der Werf. 2007. (see Applications)
No evidence for substantial aerobic methane emission by terrestrial plants: A 13C-labelling approach.
New Phytologist 175: 29-35. Ask a reprint
Kovatcheva-Datchary P, M Egbert, A Maathuis, H Smidt, WM de Vos, K Venema. 2005.
Which bacteria metabolise starch in the human colon.
Poster presentation Biomedicine in the Post-Genomic Era, Dec 1-3, Mexico City.