Publications using SIP in Food and Nutrition

 

Grant S. 2025.
Detecting prebiotic responders in the gut microbiome with proteomic stable isotope probing.
PhD Thesis Oregon State University.

Wei W, CC Wong, Z Jia, W Liu, C Liu, F Ji, Y Pan, F Wang, G Wang, L Zhao, ESH Chu, X Zhang, JJY Sung, J Yu. 2023.
Parabacteroides distasonis uses dietary inulin to suppress NASH via its metabolite pentadecanoic acid.
Nature Microbiology 8: 1534–1548.

Deng P, T Valentino, MD Flythe, HNB Moseley, JR Leachman, AJ Morris, B Hennig. 2021.
Untargeted stable isotope probing of the gut microbiota metabolome using ¹³C-labeled dietary fibers.
Journal of Proteome Research 20: 2904-2913.

Weis S, S Schnell, M Egert. 2019.
RNA-Based Stable Isotope Probing (RNA-SIP) in the gut environment.
In: Dumont MG, M Hernández García, eds. Stable Isotope Probing – Methods and Protocols. Methods in Molecular Biology vol. 2046. Humana, New York, NY.

Egert M, S Weis, S Schnell. 2018.
RNA-based stable isotope probing (RNA-SIP) to unravel intestinal host-microbe Interactions.
Methods 149: 25-30.

Herrmann E, W Young, V Reichert-Grimm, S Weis, CU Riedel, D Rosendale, H Stoklosinski, M Hunt, M Egert. 2018.
In vivo assessment of resistant starch degradation by the caecal microbiota of mice using RNA-based Stable Isotope Probing—A proof-of-principle study.
Nutrients 10: 179.

Herrmann E, W Young, D Rosendale, R Conrad, CU Riedel, M Egert. 2017.
Determination of resistant starch assimilating bacteria in fecal samples of mice by in vitro RNA-based Stable Isotope Probing.
Frontiers in Microbiology 8: 1331.

Tannock GW, B Lawley, K Munro, IM Sims, J Lee, CA Butts, N Roy. 2014.
RNA-stable isotope probing (RNA-SIP) shows carbon utilization from inulin by specific bacterial populations in the large bowel of rats.
Applied and Environmental Microbiology 80: 2240-2247.

Kovatcheva-Datchary, P. 2010.
Analyzing the functionality of the human Intestinal microbiota by stable isotope probing.
PhD Thesis Wageningen University.

Venema K, AA de Graaf, AJH Maathuis, P Kovatcheva-Datchary, H Smidt. 2010.
Fermentation in the large intestine unravelled using ¹³C-labelled substrates: implications for obesity and gut health.
In: Van der Kamp JW, Jones J, McCleary B, Topping D, eds. Dietary fibre: new frontiers for food and health: 539-554. Wageningen Acad. Publishers.

Kovatcheva-Datchary P, M Egbert, A Maathuis, M Rajilic-Stojanovic, AA de Graaf, H Smidt, WM de Vos, K Venema. 2009 (Award winning publication).
Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing. (see Applications)
Environmental Microbiology 11: 914-926.

Kovatcheva-Datchary P, M Egbert, A Maathuis, H Smidt, WM de Vos, K Venema. 2005.
Which bacteria metabolise starch in the human colon.
Poster presentation Biomedicine in the Post-Genomic Era, Dec 1-3, Mexico City.